BinaToolkit

The Biomolecular Network Alignment (BiNA) Toolkit provides a flexible framework for aligning protein-protein interaction and gene-coexpression networks using Graph Kernels

StructuralAnalysis Package

The StructuralAnalysis package is an easy to use tool for automating the analysis of structural features on protein datasets.

BioNetwork Bench

BioNetwork Bench is a flexible interactive database quering system for storing and manipulating gene expression data and genetic networks, constructing networks from expression data, iteratively querying multiple networks and expression datasets, and merging and re-using the resulting networks.