http://www.cs.iastate.edu/~cornelia/protein/ 2006-10-24T10:06:42+01:00 http://www.cs.iastate.edu/~cornelia/protein/ http://www.cs.iastate.edu/~cornelia/protein/lib/images/favicon.ico text/html 2006-03-24T16:40:03+01:00 Cornelia Caragea (cornelia@129.186.93.51) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=spring06:bio&do=diff&1143240003 Bio Papers ... text/html 2006-03-24T16:37:01+01:00 Cornelia Caragea (cornelia@129.186.93.51) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=home&do=diff&1143239821 2006 Spring Semester In Spring 2006 we meet on Thursday 1:00PM - 2:00PM, in Atanasoff 223. Schedule of talks Recommended Papers Bio Papers Announcements Wiki page for DH-Protein group created February 2nd 2006! Technical Information Gene... text/html 2006-03-23T15:02:00+01:00 Feihong Wu (wfh@129.186.93.6) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=spring06:talks:march23&do=diff&1143147720 Prediction Protein Interaction sites from residue spatical sequence profile and evolution rate By Bing Wang, Peng Chen et al. At FEBS Letters 580(2006) 380-384 NOXclass: Prediction of protein-protein interaction types By Hongbo Zhu, Francisco S ... text/html 2006-03-09T09:35:05+01:00 Cornelia Caragea (cornelia@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=spring06:talks:march9&do=diff&1141918505 March 7 Talk Speaker Cornelia Caragea Title Classification of Non-Coding RNA Using Graph Representations of Secondary Structure Authors Y.Karklin, R.F.Meraz, and S.R.Holbrook Abstract Non-coding RNA (ncRNA) molecules do not encode prote... text/html 2006-02-23T12:10:42+01:00 Cornelia Caragea (cornelia@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=spring06:papers&do=diff&1140718242 Papers @ARTICLE{Aires-de-Sousa2005Prediction, AUTHOR = {Aires-de-Sousa, J. and Gasteiger, J.}, TITLE = {Prediction of enantiomeric excess in a combinatorial library of catalytic enantioselective reactions.}, JOURNAL = {J {C}omb {C}hem}, YEAR =... text/html 2006-02-17T11:15:10+01:00 Michael Terribilini (terrible@129.186.19.244) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=spring06:talks:february9&do=diff&1140196510 Drena and Michael will present a review of relevant papers and posters from PSB 2006. All of the talks from the conference are available online at: PSB 2006 Online Proceedings Power Point slides from Drena’s talk are here Power Point slides... text/html 2006-02-16T08:51:32+01:00 Cornelia Caragea (cornelia@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=conferences&do=diff&1140101492 Journals Conferences RECOMB - January 20 (poster), Venice, Italy ISMB - March 1 (paper), May 8 (poster) - Fortaleza, Brazil DILS - March 2 (abstract), March 9 (paper) - Hinxton, UK ECCB - February 28 (paper) - Eilat, Israel Bioninformatic... text/html 2006-02-16T08:40:45+01:00 Cornelia Caragea (cornelia@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=dimas&do=diff&1140100845 DIMACS Workshop May 3-5 Sequence, Structure and Systems Approaches to Predict Protein Function ... text/html 2006-02-09T23:45:05+01:00 Jeff Sander (jdsander@129.186.160.55) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=spring06:talks:february16&do=diff&1139550305 This talk will cover zinc finger: 1.) DNA binding interaction 2.) Discovery & Design 3.) Existing data and analysis The following papers will provide some background information, much of which will be covered in the talk. Dreier B, Fuller RP, ... text/html 2006-02-02T23:05:20+01:00 Cornelia Caragea (cornelia@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=monitor&do=diff&1138943120 Person Monitoring Jornals/Conferences Monitored Carson Andorf Bioinformatics, BMC Bioinformatics, CSB Doina Caragea Ontologies and Information Integration Systems in Bioinformatics Cornelia Caragea Machine Learning for Bioinfor... text/html 2006-02-02T22:43:37+01:00 Cornelia Caragea (cornelia@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=spring06:schedule&do=diff&1138941817 Protein Seminar - Spring 2006 Schedule Meeting Time: Thursday, 1:00PM - 2:00PM Meeting Place: Atanasoff 223 Click on the Speaker in order to find out more information about the talk If you have questions about the scheduling/organization please ... text/html 2006-02-02T22:28:41+01:00 Cornelia Caragea (cornelia@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=sidebar&do=diff&1138940921 Protein Group Home Paper Monitoring Conferences Members Contact About this Wiki ... text/html 2006-02-02T16:09:02+01:00 Cornelia Caragea (cornelia@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=members&do=diff&1138918142 Members Faculty Vasant Honavar Drena Dobbs Postdocs Doina Caragea web page Byron Olson Students Carson Andorf Cornelia Caragea web page Yasser El-Manzalawy ... text/html 2006-02-02T16:04:40+01:00 Cornelia Caragea (cornelia@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=contact&do=diff&1138917880 e-mail Vasant Honavar honavar@cs.iastate.edu Drena Dobbs ddobbs@iastat&#... text/html 2006-02-02T15:49:17+01:00 Cornelia Caragea (cornelia@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=infointbio&do=diff&1138916957 Projects INDUS Protein Ontology Project Protege Groups Papers ... text/html 2006-02-02T14:47:39+01:00 Doina Caragea (dcaragea@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=projects&do=diff&1138913259 Bioinformatics Projects Protein Ontology Project Information Integration Projects The SIRUP Project - Semantic Integration Reflecting User-specific semantic Perspectives Ontology Projects Protege ... text/html 2006-02-02T14:17:17+01:00 Doina Caragea (dcaragea@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=references&do=diff&1138911437 Query Answer Papers Query Translation, Query Answering D. Calvanese, G. De Giacomo, M. Lenzerini and M. Y. Vardi (2005). View-based Query Processing: On the Relationship between Rewriting, Answering and Losslessness. Proc. of the 10th Int. Conf. ... text/html 2006-02-02T00:39:03+01:00 Doina Caragea (doina@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=research&do=diff&1138862343 Research directions ... text/html 2006-02-02T00:29:01+01:00 Doina Caragea (doina@69.5.153.100) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=publications&do=diff&1138861741 Publications 2006 Honavar, V. and Caragea, D. (2006). Querying Semantically Heterogeneous Data Sources from a User’s Point of View. 2006 Semantic Technology Conference. San Jose, CA, March 6-9, 2006 Jie, B., Caragea, D. and Honavar, V. (2006). ... text/html 2006-02-01T21:57:43+01:00 Doina Caragea (doina@129.186.93.49) http://www.cs.iastate.edu/~cornelia/protein/doku.php?id=events&do=diff&1138852663 ...