Ankit Agrawal

Research and Publications

Most of my research till date has been in bioinformatics.

Papers :

• Ankit Agrawal, Volker Brendel and Xiaoqiu Huang, Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences. In: Mandoiu, I., Sunderraman, R., Zelikovsky, A. (eds.) International Symposium on Bioinformatics Research and Applications 2008. Lecture Notes in Computer Science (Lecture Notes in Bioinformatics), vol. 4983, pp. 50-61. Springer, Heidelberg 2008.

• Ankit Agrawal, Arka Ghosh and Xiaoqiu Huang, Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition.  In: Mandoiu, I., Sunderraman, R., Zelikovsky, A. (eds.) International Symposium on Bioinformatics Research and Applications 2008. Lecture Notes in Computer Science (Lecture Notes in Bioinformatics), vol. 4983, pp. 62-73. Springer, Heidelberg 2008.

• Ankit Agrawal and Xiaoqiu Huang, DNAlignTT: Pairwise DNA Alignment with Sequence Specific Transition-Transversion Ratio, IEEE Intl. Conf. EIT 2008, May 18-21 pp. 457-459.

• Ankit Agrawal and Siddhartha Khaitan, A New Heuristic for Multiple Sequence Alignment, IEEE Intl. Conf. EIT 2008, May 18-21 pp. 225-227.

• Ankit Agrawal, Ankush Mittal, Rahul Jain and Raghav Takkar, An Adaptive Fuzzy Thresholding Algorithm for Exon Prediction, IEEE Intl. Conf. EIT 2008, May 18-21 pp. 221-224.

• Ankit Agrawal, Rahul Jain, Raghav Takkar and Ankush Mittal, PCRPA: Protein-Coding Region Predictor and Analyzer - Exon Prediction Using Power Spectrum Estimation Methods, Proceedings of the National Conference on IT and Its Application 2006, pp. B107-B111, 2006.

• Ankit Agrawal and Ankush Mittal, A Dynamic Time-Lagged Correlation Based Method to Learn Multi-Time Delay Gene Networks, Proceedings of World Academy of Science, Engineering and Technology (PWASET) Enformatika Volume 9 November 2005 ISSN 1307-6884, pp. 167-174.

• Ankit Agrawal and Ankush Mittal, Identifying Temporal Gene Networks Using Signal Processing Metrics on Time-Series Gene Expression Data, IEEE Third International Conference on Intelligent Sensing and Information Processing, 14-17 December 2005, Bangalore , India, pp. 87-92, 2005.

• Ankit Agrawal and Ankush Mittal and S. Gupta, Identifying Temporal Gene Networks by Mining Gene Expression Data, IEEE 12^th International Conference on Advanced Computing and Communications (ADCOM), Ahmedabad, India December 15^th-18^th, 2004, pp. 194-200, 2004.

• Ankush Mittal, Sumit Gupta, L.-F. Cheong and Ankit Agrawal, Camera Motion Characterization of Establishment Shots and Video Signatures, IEEE 12th International Conference on Advanced Computing and Communications (ADCOM), Ahmedabad, India December 15th-18th, 2004, pp. 663-668, 2004.

Posters :

• Ankit Agrawal, R. Jain, R. Takkar, A. Mittal, Exon prediction using a novel fuzzy logic based adaptive thresholding algorithm,  International Conference in Bioinformatics (InCoB), December 18-20, pp. P043.1-6, 2006.

Ongoing research:

Methods for estimating statistical significance of sequence alignment.