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DNAlignTT
DNAlignTT: Pairwise DNA Alignment with Sequence Specific Transition-Transversion
Ratio
Ankit Agrawal and Xiaoqiu Huang,
DNAlignTT: Pairwise DNA Alignment with Sequence Specific Transition-Transversion
Ratio, IEEE Intl. Conf. EIT 2008, May 18-21 pp. 457-459.
DNAlignTT is an iterative approach to DNA pairwise sequence alignment with
sequence-specific transition-transversion ratios. In each iteration, appropriate
substitution matrices are generated using the transition-transversion ratio for
the given sequence pair estimated by the alignment constructed in the previous
iteration. The iterations are continued until the alignment converges, or until
a maximum number of iterations.
The DNAlignTT program is written in C and C++ and runs under Unix and Linux
systems.
DNAlignTT1.0.zip
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