Akshay Deepak
I am a PhD candidate in the Computer Science department at Iowa State University. My advisor is Professor David Fernandez-Baca.
Email: akshayd@iastate.edu
[ Research Interests | Publications | Software | Courses ]
I am broadly interested in algorithms in computational biology. Specifically, I am working on phylogenetic databases, consensus and enumeration algorithms for phylogenetic trees, and multi-labeled trees.
[1] Akshay Deepak, David Fernandez-Baca, Srikanta Tirthapura, Michael M Sanderson, and Michelle M McMahon. Evominer: Frequent subtree mining in phylogenetic databases. Technical Report 11-08, Dept. of Computer Science, Iowa State University, 2011. Download
SearchTree - access to trees on arbitrary taxon sets.
MFSTMINER - enumerating maximal frequent subtrees in collections of phylogenetic trees.
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